Matthieu Schapira, PhD is a Professor in the Department of Pharmacology and Toxicology, UofT, and is the head of computational chemistry, protein bioinformatics, and data management at the SGC-Toronto. He leads the CACHE initiative for benchmarking computational ‘hit finding’. Dr. Schapira is a recognized authority in the structural chemistry of drug target classes such as chromatin regulators, ubiquitylation pathways and WDR proteins, and has created popular online informatics resources for these targets such as Chromohub, Ubihub and ChemBioPort. He is interested in novel strategies to expand and ML tools to exploit the accessible chemistry space. His trainees have gone on to become important innovators in AI-driven drug discovery at Toronto-born biotechs such as Atomwise and Cyclica.
Dilworth D, Hanley RP, Ferreira de Freitas R, Allali-Hassani A, Zhou M, Mehta N, Marunde MR, Ackloo S, Carvalho Machado RA, Khalili Yazdi A, Owens DDG, Vu V, Nie DY, Alqazzaz M, Marcon E, Li F, Chau I, Bolotokova A, Qin S, Lei M, Liu Y, Szewczyk MM, Dong A, Kazemzadeh S, Abramyan T, Popova IK, Hall NW, Meiners MJ, Cheek MA, Gibson E, Kireev D, Greenblatt JF, Keogh MC, Min J, Brown PJ, Vedadi M, Arrowsmith CH, Barsyte-Lovejoy D, James LI, Schapira M
Nat Chem Biol. 2021 . doi: 10.1038/s41589-021-00898-0
PMID: 34782742Mann MK, Zepeda-Velázquez CA, González-Álvarez H, Dong A, Kiyota T, Aman AM, Loppnau P, Li Y, Wilson B, Arrowsmith CH, Al-Awar R, Harding RJ, Schapira M
J Med Chem. 2021 . doi: 10.1021/acs.jmedchem.1c00889
PMID: 34648286Yazdani S, De Maio N, Ding Y, Shahani V, Goldman N, Schapira M
J Proteome Res. 2021 . doi: 10.1021/acs.jproteome.1c00206
PMID: 34180678Lee J, Schapira M
ACS Chem Biol. 2021 . doi: 10.1021/acschembio.1c00036
PMID: 33745272Wang J, Yazdani S, Han A, Schapira M
Drug Discov. Today. 2020 . doi: 10.1016/j.drudis.2020.02.006
PMID: 32084498Schapira M, Calabrese MF, Bullock AN, Crews CM
Nat Rev Drug Discov. 2019 . doi: 10.1038/s41573-019-0047-y
PMID: 31666732Mann MK, Franzoni I, de Freitas RF, Tempel W, Houliston S, Smith L, Vedadi M, Arrowsmith CH, Harding RJ, Schapira M
J. Med. Chem.. 2019 . doi: 10.1021/acs.jmedchem.9b00988
PMID: 31663737Liu L, Damerell DR, Koukouflis L, Tong Y, Marsden BD, Schapira M
Bioinformatics. 2019 . doi: 10.1093/bioinformatics/bty1067
PMID: 30601939Ferreira de Freitas R, Harding RJ, Franzoni I, Ravichandran M, Mann MK, Ouyang H, Lautens M, Santhakumar V, Arrowsmith CH, Schapira M
J. Med. Chem.. 2018 . doi: 10.1021/acs.jmedchem.8b00258
PMID: 29741882Ferreira de Freitas R, Schapira M
Medchemcomm. 2017 8(10):1970-1981. doi: 10.1039/c7md00381a
PMID: 29308120Eguida M, Bret G, Sindt F, Li F, Chau I, Ackloo S, Arrowsmith C, Bolotokova A, Ghiabi P, Gibson E, Halabelian L, Houliston S, Harding RJ, Hutchinson A, Loppnau P, Perveen S, Seitova A, Zeng H, Schapira M, Rognan D
J Chem Inf Model. 2024-6-25 . .doi: 10.1021/acs.jcim.4c00601
PMID: 38916159Bedart C, Shimokura G, West FG, Wood TE, Batey RA, Irwin JJ, Schapira M
Sci Data. 2024-6-6 . 11(1):597 .doi: 10.1038/s41597-024-03443-5
PMID: 38844472Owens DDG, Maitland MER, Khalili Yazdi A, Song X, Reber V, Schwalm MP, Machado RAC, Bauer N, Wang X, Szewczyk MM, Dong C, Dong A, Loppnau P, Calabrese MF, Dowling MS, Lee J, Montgomery JI, O'Connell TN, Subramanyam C, Wang F, Adamson EC, Schapira M, Gstaiger M, Knapp S, Vedadi M, Min J, Lajoie GA, Barsyte-Lovejoy D, Owen DR, Schild-Poulter C, Arrowsmith CH
Nat Chem Biol. 2024-5-21 . .doi: 10.1038/s41589-024-01618-0
PMID: 38773330Yong D, Ahmad S, Mabanglo MF, Halabelian L, Schapira M, Ackloo S, Perveen S, Ghiabi P, Vedadi M
Biochemistry. 2024-5-10 . .doi: 10.1021/acs.biochem.4c00044
PMID: 38729622Bedart C, Simoben CV, Schapira M
Curr Opin Struct Biol. 2024-4-10 . 86:102812 .doi: 10.1016/j.sbi.2024.102812
PMID: 38603987Schapira M, Halabelian L, Arrowsmith CH, Harding RJ
Nat Chem Biol. 2024-3-8 . .doi: 10.1038/s41589-024-01570-z
PMID: 38459278Mann MK, Wolf E, Silva M, Kwak HA, Wilson B, Bolotokova A, Wilson DJ, Harding RJ, Schapira M
ACS Omega. 2024-1-9 . 9(1):917-924 .doi: 10.1021/acsomega.3c07070
PMID: 38222562Rovers E, Schapira M
Methods Enzymol. 2023-10-20 . 690:311-340 .doi: 10.1016/bs.mie.2023.06.020
PMID: 37858533Harding RJ, Franzoni I, Mann MK, Szewczyk MM, Mirabi B, Ferreira de Freitas R, Owens DDG, Ackloo S, Scheremetjew A, Juarez-Ornelas KA, Sanichar R, Baker RJ, Dank C, Brown PJ, Barsyte-Lovejoy D, Santhakumar V, Schapira M, Lautens M, Arrowsmith CH
J Med Chem. 2023-7-27 . .doi: 10.1021/acs.jmedchem.3c00314
PMID: 37499118Kimani SW, Owen J, Green SR, Li F, Li Y, Dong A, Brown PJ, Ackloo S, Kuter D, Yang C, MacAskill M, MacKinnon SS, Arrowsmith CH, Schapira M, Shahani V, Halabelian L
J Chem Inf Model. 2023-6-23 . .doi: 10.1021/acs.jcim.3c00082
PMID: 37350740