OICR11029 A chemical probe for BCL6.

The probe and control may be requested here.

overview
properties
selectivity profile
in vitro potency
cell based assay data
references
co-crystal structures

overview

B cell lymphoma 6 (BCL6) is a highly regulated transcriptional repressor critical for the development and maintenance of germinal centers (GCs). BCL6 is required for generation of an effective humoral immune response and misexpression of BCL6 is widely seen in several forms of non-Hodgkin Lymphoma (NHL). B cell lymphoma 6 (BCL6) is a member of the BTB-ZF family of transcription factors. In these proteins, the N-terminal BTB domain binds to epigenetic modifiers (co-repressors) through protein-protein interactions, while the C-terminal zinc fingers mediate site-specific DNA binding [1, 2]. These corepressor proteins use a 17 amino acid motifs to bind to a solvent-exposed “lateral groove” formed by the two chains of the BCL6 BTB homodimer. Agents that bind to the BCL6 BTB lateral groove compete for corepressor binding and can reverse the repression activities of BCL6 [3]. In principle, the selective targeting of protein-protein interactions (PPI’s) in the BCL6 BTB domain is a more precise form of inhibition of BCL6 relative to complete inactivation or removal of the protein. OICR in collaboration with the UHN has developed, a potent, and highly selective BCL6-BTB chemical probe [4]. OICR11029 shows high in vitro as well as cellular potency. OICR11029 is accompanied by a negative control (OICR11600), which is structurally closely related to the probe molecule.

properties

Physical and Chemical Properties of OICR11029
Molecular Weight	586.40
Molecular Formula	C26H25N7O5Cl2
IUPAC Name	(S)-3-chloro-5-(7-(2-((5-chloro-2-(3-methylmorpholino)pyridin-4-yl)amino)-2-oxoethyl)-3-methyl-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)-2-hydroxybenzamide
cLogP	2.04
tPSA	153.16
No. of Chiral Centers	1
No. of rotatable bonds	6
No. of H-bond Acceptors	8
No. of H-bond Donors	3
Storage	room temperature
Solubility (Kinetic)	29 uM

SMILES:CN1C=NC2=C(C1=O)C(C3=CC(C(N)=O)=C(O)C(Cl)=C3)=CN2CC(NC4=C(Cl)C=NC(N5CCOC[C@@H]5C)=C4)=O

InChI=1S/C26H25Cl2N7O5/c1-13-11-40-4-3-35(13)20-7-19(18(28)8-30-20)32-21(36)10-34-9-16(22-25(34)31-12-33(2)26(22)39)14-5-15(24(29)38)23(37)17(27)6-14/h5-9,12-13,37H,3-4,10-11H2,1-2H3,(H2,29,38)(H,30,32,36)/t13-/m0/s1

InChlKey: NDRFFOKFYGUOKD-ZDUSSCGKSA-N

Physical and Chemical Properties of OICR11600
Molecular Weight	596.03
Molecular Formula	C28H30ClN7O6
IUPAC Name	(S)-5-(7-(2-((5-chloro-2-(3-methylmorpholino)pyridin-4-yl)amino)-2-oxoethyl)-3-methyl-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)-3-ethoxy-2-hydroxybenzamide
cLogP	1.84
tPSA	162.39
No. of Chiral Centers	1
No. of rotatable bonds	8
No. of H-bond Acceptors	9
No. of H-bond Donors	3
Storage	room temperature
Solubility (Kinetic)	Not tested

SMILES:CN1C=NC2=C(C1=O)C(C3=CC(C(N)=O)=C(O)C(OCC)=C3)=CN2CC(NC4=C(Cl)C=NC(N5CCOC[C@@H]5C)=C4)=O

InChI=InChI=1S/C28H30ClN7O6/c1-4-42-21-8-16(7-17(25(21)38)26(30)39)18-11-35(27-24(18)28(40)34(3)14-32-27)12-23(37)33-20-9-22(31-10-19(20)29)36-5-6-41-13-15(36)2/h7-11,14-15,38H,4-6,12-13H2,1-3H3,(H2,30,39)(H,31,33,37)/t15-/m0/s1

InChlKey: PWMORLQFVWCZTJ-HNNXBMFYSA-N

selectivity profile

OICR11029 was found to be highly selective as determined at Eurofins Pharma in their kinome-wide panel at 3 µM and their CEREP safety panel at 10 uM assay.

OICR11029 was assessed in the Eurofins CEREP Safety panel of at 10 µM concentration; Only 1/53 >50%; MT1 agonist inhibition at 10 µM

BTB domain	OICR11029 (SPR KD, uM)
BCL6	0.010
BAZF (BCL6B)	1.40
FAZF, PLZF, Miz1, Kaiso, LRF	>10

in vitro potency

OICR11029

OICR11600

Fold over negative control

Potency

KD_SPR [IC50, µM]

0.010

41.1

X 4,110

cell based assay data

OICR11029 displayed an IC50 of 375 nM in the cellular luciferase assay in SUDHL4 cells and 602 nM in the Karpass-422 short term growth inhibition assay. NB: Karpass-422 is a BCL6-dependent cancer cell line.