Publications

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Displaying 2251 - 2286 of 2286

2004

September 2004

Allodynia in rats infected with varicella zoster virus--a small animal model for post-herpetic neuralgia.

Dalziel, RG; Bingham, S; Sutton, D; Grant, D; Champion, JM; Dennis, SA; Quinn, JP; Bountra, C; Mark, MA;
Brain Research Reviews 46:234-242 . doi: 10.1016/j.brainresrev.2004.07.008
Publication date: September 30, 2004
PMID: 15464211

The long acidic tail of high mobility group box 1 (HMGB1) protein forms an extended and flexible structure that interacts with specific residues within and between the HMG boxes.

Knapp, S; Müller, S; Digilio, G; Bonaldi, T; Bianchi, ME; Musco, G;
Biochemistry 43:11992-11997 . doi: 10.1021/bi049364k
Publication date: September 27, 2004
PMID: 15379539

August 2004

Control of immune responses by trafficking cell surface proteins, vesicles and lipid rafts to and from the immunological synapse.

Taner, SB; Onfelt, B; Pirinen, NJ; McCann, FE; Magee, AI; Davis, DM;
Traffic 5:651-661 . doi: 10.1111/j.1600-0854.2004.00214.x
Publication date: August 31, 2004
PMID: 15296490

Crystal structure of a putative NADPH-dependent oxidoreductase (GI: 18204011) from mouse at 2.10 A resolution.

Levin, I; Schwarzenbacher, R; McMullan, D; Abdubek, P; Ambing, E; Biorac, T; Cambell, J; Canaves, JM; Chiu, H-J; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Jaroszewski, L; Karlak, C; Klock, HE; Koesema, E; Kreusch, A; Kuhn, P; Lesley, SA; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Reyes, R; Robb, A; Sims, E; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; von Delft, F; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 56:629-633 . doi: 10.1002/prot.20163
Publication date: August 14, 2004
PMID: 15229897

Crystal structure of an allantoicase (YIR029W) from Saccharomyces cerevisiae at 2.4 A resolution.

Xu, Q; Schwarzenbacher, R; Page, R; Sims, E; Abdubek, P; Ambing, E; Biorac, T; Brinen, LS; Cambell, J; Canaves, JM; Chiu, H-J; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Jaroszewski, L; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; Levin, I; McMullan, D; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Quijano, K; Reyes, R; Rezezadeh, F; Robb, A; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; von Delft, F; Wang, X; West, B; Wolf, G; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 56:619-624 . doi: 10.1002/prot.20164
Publication date: August 14, 2004
PMID: 15229895

Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from the cupin family at 1.83 A resolution.

McMullan, D; Schwarzenbacher, R; Jaroszewski, L; von Delft, F; Klock, HE; Vincent, J; Quijano, K; Abdubek, P; Ambing, E; Biorac, T; Brinen, LS; Canaves, JM; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Eshaghi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Karlak, C; Koesema, E; Kreusch, A; Kuhn, P; Levin, I; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Reyes, R; Rezezadeh, F; Robb, A; Sims, E; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Lesley, SA; Wilson, IA;
Proteins 56:615-618 . doi: 10.1002/prot.20139
Publication date: August 14, 2004
PMID: 15229894

Crystal structure of a novel manganese-containing cupin (TM1459) from Thermotoga maritima at 1.65 A resolution.

Jaroszewski, L; Schwarzenbacher, R; von Delft, F; McMullan, D; Brinen, LS; Canaves, JM; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Levin, I; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Reyes, R; Rezezadeh, F; Robb, A; Sims, E; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 56:611-614 . doi: 10.1002/prot.20130
Publication date: August 14, 2004
PMID: 15229893

Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00-A resolution reveals a new fold.

Bakolitsa, C; Schwarzenbacher, R; McMullan, D; Brinen, LS; Canaves, JM; Dai, X; Deacon, AM; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Jaroszewski, L; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Robb, A; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; von Delft, F; Wang, X; West, B; Wolf, G; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 56:607-610 . doi: 10.1002/prot.20138
Publication date: August 14, 2004
PMID: 15229892

The structure and dynamics of tandem WW domains in a negative regulator of notch signaling, Suppressor of deltex.

Fedoroff, OY; Townson, SA; Golovanov, AP; Baron, M; Avis, JM;
Journal of Biological Chemistry 279:34991-35000 . doi: 10.1074/jbc.m404987200
Publication date: August 12, 2004
PMID: 15173166

Tic32, an essential component in chloroplast biogenesis.

Hörmann, F; Küchler, M; Sveshnikov, D; Oppermann, U; Li, Y; Soll, J;
Journal of Biological Chemistry 279:34756-34762 . doi: 10.1074/jbc.M402817200
Publication date: August 12, 2004
PMID: 15180984

Direct observation of RuvAB-catalyzed branch migration of single Holliday junctions.

Amit, R; Gileadi, O; Stavans, J;
Proceedings of the National Academy of Sciences 101:11605-11610 . doi: 10.1073/pnas.0404332101
Publication date: August 9, 2004
PMID: 15292509

High-level production and optimization of monodispersity of 11beta-hydroxysteroid dehydrogenase type 1.

Elleby, B; Svensson, S; Wu, X; Stefansson, K; Nilsson, J; Hallén, D; Oppermann, U; Abrahmsén, L;
BBA - Biochimica et Biophysica Acta 1700:199-207 . doi: 10.1016/j.bbapap.2004.05.003
Publication date: August 1, 2004
PMID: 15262229

July 2004

Increase of purinergic receptor P2X(7) in injured human nerves and dorsal root ganglia

Casula, MA; Chessell, IP; Bountra, C; Yiangou, Y; Birch, R; Anand, P;
Journal of Neurology, Neurosurgery and Psychiatry 75:1227-1227 . doi:
Publication date: July 31, 2004
PMID:

Increased cyclooxygenase-2 (Cox-2) expression by macrophages in chronic but not acute nerve injury in humans and rodents

Durrenberger, PF; Facer, P; Gray, RA; Chessell, IP; Naylor, A; Bountra, C; Banati, RB; Elliot, D; Anand, P;
Journal of Neurology, Neurosurgery and Psychiatry 75:1228-1228 . doi:
Publication date: July 31, 2004
PMID:

Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 A resolution.

Levin, I; Schwarzenbacher, R; Page, R; Abdubek, P; Ambing, E; Biorac, T; Brinen, LS; Campbell, J; Canaves, JM; Chiu, H-J; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Jaroszewski, L; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; McMullan, D; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Quijano, K; Reyes, R; Rezezadeh, F; Robb, A; Sims, E; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; von Delft, F; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 56:404-408 . doi: 10.1002/prot.20090
Publication date: July 31, 2004
PMID: 15211526

Crystal structure of a methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.9 A resolution.

Spraggon, G; Schwarzenbacher, R; Kreusch, A; McMullan, D; Brinen, LS; Canaves, JM; Dai, X; Deacon, AM; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Jaroszewski, L; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kuhn, P; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Rezezadeh, F; Robb, A; Sims, E; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; von Delft, F; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Lesley, SA; Wilson, IA;
Proteins 56:396-400 . doi: 10.1002/prot.20084
Publication date: July 31, 2004
PMID: 15211524

From crystals to pdb: building a high throughput crystallography pipeline for strucural genomics

Chiu, H; Wolf, G; West, W; van den Bedem, H; Miller, MD; Zhang, Z; Morse, A; von Delft, F; Elsliger, MA; Grzechnik, SK;
Protein Science 13:184-184 . doi:
Publication date: July 31, 2004
PMID:

HMGB1 is an endogenous immune adjuvant released by necrotic cells.

Rovere-Querini, P; Capobianco, A; Scaffidi, P; Valentinis, B; Catalanotti, F; Giazzon, M; Dumitriu, IE; Müller, S; Iannacone, M; Traversari, C; Bianchi, ME; Manfredi, AA;
EMBO Reports 5:825-830 . doi: 10.1038/sj.embor.7400205
Publication date: July 31, 2004
PMID: 15272298

Crystal structure of a putative oxalate decarboxylase (TM1287) from Thermotoga maritima at 1.95 A resolution.

Schwarzenbacher, R; von Delft, F; Jaroszewski, L; Abdubek, P; Ambing, E; Biorac, T; Brinen, LS; Canaves, JM; Cambell, J; Chiu, H-J; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; Levin, I; McMullan, D; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Robb, A; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 56:392-395 . doi: 10.1002/prot.20016
Publication date: July 31, 2004
PMID: 15211523

Crystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.8 A resolution.

Heine, A; Canaves, JM; von Delft, F; Brinen, LS; Dai, X; Deacon, AM; Elsliger, MA; Eshaghi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Guda, C; Jaroszewski, L; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; McMullan, D; McPhillips, TM; Miller, MA; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Robb, A; Rodrigues, K; Schwarzenbacher, R; Selby, TL; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; Wang, X; West, B; Wolf, G; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 56:387-391 . doi: 10.1002/prot.20003
Publication date: July 31, 2004
PMID: 15211522

Crystal structure and biophysical characterization of human GDP-D-mannose 4, 6-dehydratase

Vedadi, M; Walker, JR; Sharma, S; Houston, SA; Wasney, GA; Loppnau, P; Oppermann, U;
Protein Science 13:81-82 . doi:
Publication date: July 31, 2004
PMID:

Membrane protein isolation by in situ solubilization, partitioning and affinity adsorption in aqueous two-phase systems. Purification of the human type 1 11beta-hydroxysteroid dehydrogenase.

Roobol-Bóza, M; Dolby, V; Doverskog, M; Barrefelt, A; Lindqvist, F; Oppermann, UC; Köhler Van Alstine, K; Tjerneld, F;
Journal of Chromatography A 1043:217-223 . doi:
Publication date: July 22, 2004
PMID: 15330095

Expression of the sodium channel beta3 subunit in injured human sensory neurons.

Casula, MA; Facer, P; Powell, AJ; Kinghorn, IJ; Plumpton, C; Tate, SN; Bountra, C; Birch, R; Anand, P;
NeuroReport 15:1629-1632 . doi:
Publication date: July 18, 2004
PMID: 15232296

June 2004

Crystal structure of a ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 A resolution.

Xu, Q; Schwarzenbacher, R; McMullan, D; von Delft, F; Brinen, LS; Canaves, JM; Dai, X; Deacon, AM; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Jaroszewski, L; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; Levin, I; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Robb, A; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; Wang, X; West, B; Wolf, G; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 56:171-175 . doi: 10.1002/prot.20129
Publication date: June 30, 2004
PMID: 15162497

Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 A resolution.

Santelli, E; Schwarzenbacher, R; McMullan, D; Biorac, T; Brinen, LS; Canaves, JM; Cambell, J; Dai, X; Deacon, AM; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Jaroszewski, L; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Rezezadeh, F; Robb, A; Sims, E; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; von Delft, F; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 56:167-170 . doi: 10.1002/prot.20120
Publication date: June 30, 2004
PMID: 15162496

May 2004

Crystal structure of an Udp-n-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 A resolution.

Spraggon, G; Schwarzenbacher, R; Kreusch, A; Lee, CC; Abdubek, P; Ambing, E; Biorac, T; Brinen, LS; Canaves, JM; Cambell, J; Chiu, H-J; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Jaroszewski, L; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kuhn, P; Levin, I; McMullan, D; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Robb, A; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; von Delft, F; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Lesley, SA; Wilson, IA;
Proteins 55:1078-1081 . doi: 10.1002/prot.20034
Publication date: May 31, 2004
PMID: 15146505

Crystal structure of an aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 A resolution.

Schwarzenbacher, R; Jaroszewski, L; von Delft, F; Abdubek, P; Ambing, E; Biorac, T; Brinen, LS; Canaves, JM; Cambell, J; Chiu, H-J; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; Levin, I; McMullan, D; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Robb, A; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 55:759-763 . doi: 10.1002/prot.10646
Publication date: May 14, 2004
PMID: 15103638

Crystal structure of a type II quinolic acid phosphoribosyltransferase (TM1645) from Thermotoga maritima at 2.50 A resolution.

Schwarzenbacher, R; Jaroszewski, L; von Delft, F; Abdubek, P; Ambing, E; Biorac, T; Brinen, LS; Canaves, JM; Cambell, J; Chiu, H-J; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; Levin, I; McMullan, D; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Robb, A; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 55:768-771 . doi: 10.1002/prot.20029
Publication date: May 14, 2004
PMID: 15103640

April 2004

Crystal structure of a phosphoribosylaminoimidazole mutase PurE (TM0446) from Thermotoga maritima at 1.77-A resolution.

Schwarzenbacher, R; Jaroszewski, L; von Delft, F; Abdubek, P; Ambing, E; Biorac, T; Brinen, LS; Canaves, JM; Cambell, J; Chiu, H-J; Dai, X; Deacon, AM; DiDonato, M; Elsliger, M-A; Eshagi, S; Floyd, R; Godzik, A; Grittini, C; Grzechnik, SK; Hampton, E; Karlak, C; Klock, HE; Koesema, E; Kovarik, JS; Kreusch, A; Kuhn, P; Lesley, SA; Levin, I; McMullan, D; McPhillips, TM; Miller, MD; Morse, A; Moy, K; Ouyang, J; Page, R; Quijano, K; Robb, A; Spraggon, G; Stevens, RC; van den Bedem, H; Velasquez, J; Vincent, J; Wang, X; West, B; Wolf, G; Xu, Q; Hodgson, KO; Wooley, J; Wilson, IA;
Proteins 55:474-478 . doi: 10.1002/prot.20023
Publication date: April 30, 2004
PMID: 15048837

Electron microscopy of wet tissues: a case study in renal pathology.

Nyska, A; Cummings, CA; Vainshtein, A; Nadler, J; Ezov, N; Grunfeld, Y; Gileadi, O; Behar, V;
Toxicologic Pathology 32:357-363 . doi: 10.1080/01926230490431772
Publication date: April 30, 2004
PMID: 15204979

Fat cell precursors from different human fat depots are distinct: Morphological and gene expression profiles

Kirkland, J; Tchkonia, T; Frampton, G; Lenberg, M; Giorgadze, N; Sabban, A; Pirtskhalava, T; Cartwright, M; Gerry, N; Forse, A; Thomou, T; Gileadi, O;
International Journal of Obesity 28:S99-S99 . doi:
Publication date: April 30, 2004
PMID:

Cell surface organization of stress-inducible proteins ULBP and MICA that stimulate human NK cells and T cells via NKG2D.

Eleme, K; Taner, SB; Onfelt, B; Collinson, LM; McCann, FE; Chalupny, NJ; Cosman, D; Hopkins, C; Magee, AI; Davis, DM;
Journal of Experimental Medicine 199:1005-1010 . doi: 10.1084/jem.20032194
Publication date: April 4, 2004
PMID: 15051759

Hepatitis C virus NS5A protein interacts with 2',5'-oligoadenylate synthetase and inhibits antiviral activity of IFN in an IFN sensitivity-determining region-independent manner.

Taguchi T, Nagano-Fujii M, Akutsu M, Kadoya H, Ohgimoto S, Ishido S, Hotta H.
J Gen Virol 85(Pt 4):959-69 . doi: 10.1099/vir.0.19513-0
Publication date: April 1, 2004
PMID: 15039538

2018

April 2018

Non-competitive cyclic peptides for targeting enzyme–substrate complexes

Mcallister, TE; Yeh, T-L; Abboud, ; Leung, IKH; Hookway, ES; King, ONF; Bhushan, B; Williams, ST; Hopkinson, RJ; Muenzel, M; Loik, ND; Chowdhury, R; Oppermann, U; Claridge, TDW; Goto, Y; Suga, H; Schofield, CJ; Kawamura, A;
Chemical Science :- . doi: 10.1039/c8sc00286j
Publication date: April 30, 2018
PMID: 29899950

2013

January 2013

Measuring Cation Transport by Na,K- and H,K-ATPase in <em>Xenopus</em> Oocytes by Atomic Absorption Spectrophotometry: An Alternative to Radioisotope Assays

Dürr, KL; Tavraz, NN; Spiller, S; Friedrich, T;
Journal of Visualized Experiments :- . doi: 10.3791/50201
Publication date: January 1, 2013
PMID:

2012