Publications

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Displaying 351 - 400 of 2162

2019

July 2019

A C19MC-LIN28A-MYCN Oncogenic Circuit Driven by Hijacked Super-enhancers Is a Distinct Therapeutic Vulnerability in ETMRs: A Lethal Brain Tumor.
Sin-Chan P, Mumal I, Suwal T, Ho B, Fan X, Singh I, Du Y, Lu M, Patel N, Torchia J, Popovski D, Fouladi M, Guilhamon P, Hansford JR, Leary S, Hoffman LM, Mulcahy Levy JM, Lassaletta A, Solano-Paez P, Rivas E, Reddy A, Gillespie GY, Gupta N, Van Meter TE, Nakamura H, Wong TT, Ra YS, Kim SK, Massimi L, Grundy RG, Fangusaro J, Johnston D, Chan J, Lafay-Cousin L, Hwang EI, Wang Y, Catchpoole D, Michaud J, Ellezam B, Ramanujachar R, Lindsay H, Taylor MD, Hawkins CE, Bouffet E, Jabado N, Singh SK, Kleinman CL, Barsyte-Lovejoy D, Li XN, Dirks PB, Lin CY, Mack SC, Rich JN, Huang A
Cancer Cell 36(1):51-67.e7 . doi: 10.1016/j.ccell.2019.06.002
Publication date: July 8, 2019
PMID: 31287992
Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3.
Böttcher J, Dilworth D, Reiser U, Neumüller RA, Schleicher M, Petronczki M, Zeeb M, Mischerikow N, Allali-Hassani A, Szewczyk MM, Li F, Kennedy S, Vedadi M, Barsyte-Lovejoy D, Brown PJ, Huber KVM, Rogers CM, Wells CI, Fedorov O, Rumpel K, Zoephel A, Mayer M, Wunberg T, Böse D, Zahn S, Arnhof H, Berger H, Reiser C, Hörmann A, Krammer T, Corcokovic M, Sharps B, Winkler S, Häring D, Cockcroft XL, Fuchs JE, Müllauer B, Weiss-Puxbaum A, Gerstberger T, Boehmelt G, Vakoc CR, Arrowsmith CH, Pearson M, McConnell DB
Nat. Chem. Biol. . doi: 10.1038/s41589-019-0310-x
Publication date: July 8, 2019
PMID: 31285596
Peptide Hydrogels of Fully-Defined Composition & Mechanics for Probing Cell-Cell & Cell-Matrix Interactions In Vitro
Ashworth J, Thompsona J, Jamesa J, Slatera C, Pijuan-Galitoa S, Lis-Slimaka K, Holleyc R, Mead K, Thompsone A, Arkille K, Tassierif M, Wrightg A, FARNIE G, merry C
Matrix Biology . doi: 10.1016/j.matbio.2019.06.009
Publication date: July 8, 2019
PMID: 31295578
Lesson from a Fab-enabled co-crystallization study of TDRD2 and PIWIL1.
Chen S, Zhang W, Min J, Liu K
Methods . doi: 10.1016/j.ymeth.2019.07.002
Publication date: July 6, 2019
PMID: 31288074
High-Throughput Site-Directed Mutagenesis.
Strain-Damerell C, Burgess-Brown NA
Methods Mol. Biol. 2025:281-296 . doi: 10.1007/978-1-4939-9624-7_13
Publication date: July 4, 2019
PMID: 31267458
High-Throughput Purification of Protein Kinases from Escherichia coli and Insect Cells.
Mathea S, Salah E, Knapp S
Methods Mol. Biol. 2025:191-202 . doi: 10.1007/978-1-4939-9624-7_8
Publication date: July 4, 2019
PMID: 31267453
CDK16: the pick of the understudied PCTAIRE kinases.
Axtman A, Drewry D, Wells C
Nat Rev Drug Discov 18(7):489 . doi: 10.1038/d41573-019-00076-x
Publication date: July 4, 2019
PMID: 31267068
High-throughput site-directed mutagenesis
Strain-Damerell C, Burgess-Brown NA
Methods Mol Biol 2025:281-296 . doi: 10.1007/978-1-4939-9624-7_13
Publication date: July 3, 2019
PMID: 31267458
Target 2035: probing the human proteome.
Carter AJ, Kraemer O, Zwick M, Mueller-Fahrnow A, Arrowsmith CH, Edwards AM
Drug Discov. Today . doi: 10.1016/j.drudis.2019.06.020
Publication date: July 3, 2019
PMID: 31278990
Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase.
Chen Z, Picaud S, Filippakopoulos P, D'Angiolella V, Bullock AN
Structure . doi: 10.1016/j.str.2019.06.005
Publication date: July 2, 2019
PMID: 31279627
Discovery of a Potent and Selective Fragment-like Inhibitor of Methyllysine Reader Protein Spindlin 1 (SPIN1).
Xiong Y, Greschik H, Johansson C, Seifert L, Bacher J, Park KS, Babault N, Martini ML, Fagan V, Li F, Chau I, Christott T, Dilworth D, Barsyte-Lovejoy D, Vedadi M, Arrowsmith CH, Brennan PE, Fedorov O, Jung M, Farnie G, Liu J, Oppermann UCT, Schüle R, Jin J
J. Med. Chem. . doi: 10.1021/acs.jmedchem.9b00522
Publication date: July 1, 2019
PMID: 31260300
Increased EZH2 expression in prostate cancer is associated with metastatic recurrence following external beam radiotherapy
Wu X, Scott H, Carlsson SV, Sjoberg DD, Cerundolo L, Lilja H, Prevo R, Rieunier G, Macaulay V, Higgins GS, Verrill CL, Lamb AD, Cunliffe VT, Bountra C, Hamdy FC, Bryant RJ
The Prostate 79:1079-1089 . doi: 10.1002/pros.23817
Publication date: July 1, 2019
PMID: 31104332

June 2019

A genetics-led approach defines the drug target landscape of 30 immune-related traits.
Fang H, De Wolf H, Knezevic B, Burnham KL, Osgood J, Sanniti A, Lledó Lara A, Kasela S, De Cesco S, Wegner JK, Handunnetthi L, McCann FE, Chen L, Sekine T, Brennan PE, Marsden BD, Damerell D, O'Callaghan CA, Bountra C, Bowness P, Sundström Y, Milani L, Berg L, Göhlmann HW, Peeters PJ, Fairfax BP, Sundström M, Knight JC
Nat. Genet. . doi: 10.1038/s41588-019-0456-1
Publication date: June 28, 2019
PMID: 31253980
Streamlining the production of proteins for structural biology.
Owens RJ, Gileadi O
Biophys Rev . doi: 10.1007/s12551-019-00565-8
Publication date: June 27, 2019
PMID: 31250316
Streamlining the production of proteins for structural biology
Owens RJ, Gileadi O
Biophysical Reviews 11:533-534 . doi: 10.1007/s12551-019-00565-8
Publication date: June 27, 2019
PMID: 31250316
Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation.
El Bakkouri M, Kouidmi I, Wernimont AK, Amani M, Hutchinson A, Loppnau P, Kim JJ, Flueck C, Walker JR, Seitova A, Senisterra G, Kakihara Y, Kim C, Blackman MJ, Calmettes C, Baker DA, Hui R
Proc. Natl. Acad. Sci. U.S.A. . doi: 10.1073/pnas.1905558116
Publication date: June 25, 2019
PMID: 31239348
Structural basis of HMCES interactions with abasic DNA and multivalent substrate recognition.
Halabelian L, Ravichandran M, Li Y, Zeng H, Rao A, Aravind L, Arrowsmith CH
Nat. Struct. Mol. Biol. . doi: 10.1038/s41594-019-0246-6
Publication date: June 24, 2019
PMID: 31235913
Insights into the full-length SRPK2 structure and its hydrodynamic behavior.
de Almeida Alves Barbosa É, Seraphim TV, Gandin CA, Teixeira LF, da Silva RAG, Righetto GL, Goncalves KA, de Souza Vasconcellos R, de Almeida Lamêgo MR, Júnior AS, Fietto JLR, Kobarg J, Gileadi C, Massirer KB, Borges JC, de Oliveira Neto M, Bressan GC
Int. J. Biol. Macromol. . doi: 10.1016/j.ijbiomac.2019.06.135
Publication date: June 20, 2019
PMID: 31229549
Structure-guided fragment-based drug discovery at the synchrotron: screening binding sites and correlations with hotspot mapping.
Thomas SE, Collins P, James RH, Mendes V, Charoensutthivarakul S, Radoux C, Abell C, Coyne AG, Floto RA, von Delft F, Blundell TL
Philos Trans A Math Phys Eng Sci 377(2147):20180422 . doi: 10.1098/rsta.2018.0422
Publication date: June 17, 2019
PMID: 31030650
Synthesis and Structure-Activity Relationships of 3,5-Disubstituted-pyrrolo[2,3- b]pyridines as Inhibitors of Adaptor-Associated Kinase 1 with Antiviral Activity
Verdonck S, Pu SY, Sorrell FJ, Elkins JM, Froeyen M, Gao LJ, Prugar LI, Dorosky DE, Brannan JM, Barouch-Bentov R, Knapp S, Dye JM, Herdewijn P, Einav S, De Jonghe S
Journal of Medicinal Chemistry 62:5810-5831 . doi: 10.1021/acs.jmedchem.9b00136
Publication date: June 12, 2019
PMID: 31136173
Expanding the genetic and phenotypic spectrum of branched-chain amino acid transferase 2 deficiency
Knerr I, Colombo R, Urquhart J, Morais A, Merinero B, Oyarzabal A, Pérez B, Jones SA, Perveen R, Preece MA, Rogers Y, Treacy EP, Mayne P, Zampino G, MacKinnon S, Wassmer E, Yue WW, Robinson I, Rodríguez-Pombo P, Olpin SE, Banka S
Journal of Inherited Metabolic Disease 42:809-817 . doi: 10.1002/jimd.12135
Publication date: June 8, 2019
PMID: 31177572
Expanding the genetic and phenotypic spectrum of branched-chain amino acid transferase 2 deficiency.
Knerr I, Colombo R, Urquhart J, Morais A, Merinero B, Oyarzabal A, Pérez B, Jones SA, Perveen R, Preece MA, Rogers Y, Treacy EP, Mayne P, Zampino G, MacKinnon S, Wassmer E, Yue WW, Robinson I, Rodríguez-Pombo P, Olpin SE, Banka S
J. Inherit. Metab. Dis. . doi: 10.1002/jimd.12135
Publication date: June 8, 2019
PMID: 31177572
Structural and functional consequences of the STAT5BN642H driver mutation.
de Araujo ED, Erdogan F, Neubauer HA, Meneksedag-Erol D, Manaswiyoungkul P, Eram MS, Seo HS, Qadree AK, Israelian J, Orlova A, Suske T, Pham HTT, Boersma A, Tangermann S, Kenner L, Rülicke T, Dong A, Ravichandran M, Brown PJ, Audette GF, Rauscher S, Dhe-Paganon S, Moriggl R, Gunning PT
Nat Commun 10(1):2517 . doi: 10.1038/s41467-019-10422-7
Publication date: June 7, 2019
PMID: 31175292
Rapid Covalent-Probe Discovery by Electrophile-Fragment Screening
Resnick E, Bradley A, Gan J, Douangamath A, Krojer T, Sethi R, Geurink PP, Aimon A, Amitai G, Bellini D, Bennett J, Fairhead M, Fedorov O, Gabizon R, Gan J, Guo J, Plotnikov A, Reznik N, Ruda GF, Díaz-Sáez L, Straub VM, Szommer T, Velupillai S, Zaidman D, Zhang Y, Coker AR, Dowson CG, Barr HM, Wang C, Huber KVM, Brennan PE, Ovaa H, von Delft F, London N
Journal of the American Chemical Society 141:8951-8968 . doi: 10.1021/jacs.9b02822
Publication date: June 5, 2019
PMID: 31060360
Genetic, structural, and functional analysis of pathogenic variations causing methylmalonyl-CoA epimerase deficiency
Heuberger K, Bailey HJ, Burda P, Chaikuad A, Krysztofinska E, Suormala T, Bürer C, Lutz S, Fowler B, Froese DS, Yue WW, Baumgartner MR
Biochimica et Biophysica Acta - Molecular Basis of Disease 1865:1265-1272 . doi: 10.1016/j.bbadis.2019.01.021
Publication date: June 1, 2019
PMID: 30682498

May 2019

A Ubiquitin-Binding Domain that Binds a Structural Fold Distinct from that of Ubiquitin.
Lim M, Newman JA, Williams HL, Masino L, Aitkenhead H, Gravard AE, Gileadi O, Svejstrup JQ
Structure . doi: 10.1016/j.str.2019.05.003
Publication date: May 28, 2019
PMID: 31204252
15-deoxy-Δ12,14-Prostaglandin J2 inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism.
Abis G, Charles RL, Kopec J, Yue WW, Atkinson RA, Bui TTT, Lynham S, Popova S, Sun YB, Fraternali F, Eaton P, Conte MR
Commun Biol 2:188 . doi: 10.1038/s42003-019-0426-2
Publication date: May 28, 2019
PMID: 31123712
Synthesis and structure-activity relationships of 3,5-disubstituted-pyrrolo[2,3- b]pyridines as inhibitors of adaptor associated kinase 1 (AAK1) with antiviral activity.
Verdonck S, Pu SY, Sorrell FJ, Elkins JM, Froeyen M, Gao LJ, Prugar LI, Dorosky DE, Brannan JM, Barouch-Bentov R, Knapp S, Dye JM, Herdewijn P, Einav S, De Jonghe S
J. Med. Chem. . doi: 10.1021/acs.jmedchem.9b00136
Publication date: May 28, 2019
PMID: 31136173
Increased EZH2 expression in prostate cancer is associated with metastatic recurrence following external beam radiotherapy.
Wu X, Scott H, Carlsson SV, Sjoberg DD, Cerundolo L, Lilja H, Prevo R, Rieunier G, Macaulay V, Higgins GS, Verrill CL, Lamb AD, Cunliffe VT, Bountra C, Hamdy FC, Bryant RJ
Prostate . doi: 10.1002/pros.23817
Publication date: May 18, 2019
PMID: 31104332
ALK2 inhibitors display beneficial effects in preclinical models of ACVR1 mutant diffuse intrinsic pontine glioma.
Carvalho D, Taylor KR, Olaciregui NG, Molinari V, Clarke M, Mackay A, Ruddle R, Henley A, Valenti M, Hayes A, Brandon AH, Eccles SA, Raynaud F, Boudhar A, Monje M, Popov S, Moore AS, Mora J, Cruz O, Vinci M, Brennan PE, Bullock AN, Carcaboso AM, Jones C
Commun Biol 2:156 . doi: 10.1038/s42003-019-0420-8
Publication date: May 18, 2019
PMID: 31098401
Structure of the human frataxin-bound iron-sulfur cluster assembly complex provides insight into its activation mechanism
Fox NG, Yu X, Feng X, Bailey HJ, Martelli A, Nabhan JF, Strain-Damerell C, Bulawa C, Yue WW, Han S
Nature Communications 10:2210- . doi: 10.1038/s41467-019-09989-y
Publication date: May 17, 2019
PMID: 31101807
C8-substituted pyrido[3,4-d]pyrimidin-4(3H)-ones: Studies towards the identification of potent, cell penetrant Jumonji C domain containing histone lysine demethylase 4 subfamily (KDM4) inhibitors, compound profiling in cell-based target engagement assays.
Le Bihan YV, Lanigan RM, Atrash B, McLaughlin MG, Velupillai S, Malcolm AG, England KS, Ruda GF, Mok NY, Tumber A, Tomlin K, Saville H, Shehu E, McAndrew C, Carmichael L, Bennett JM, Jeganathan F, Eve P, Donovan A, Hayes A, Wood F, Raynaud FI, Fedorov O, Brennan PE, Burke R, van Montfort RLM, Rossanese OW, Blagg J, Bavetsias V
Eur J Med Chem 177:316-337 . doi: 10.1016/j.ejmech.2019.05.041
Publication date: May 17, 2019
PMID: 31158747
Structure of the human frataxin-bound iron-sulfur cluster assembly complex provides insight into its activation mechanism.
Fox NG, Yu X, Feng X, Bailey HJ, Martelli A, Nabhan JF, Strain-Damerell C, Bulawa C, Yue WW, Han S
Nat Commun 10(1):2210 . doi: 10.1038/s41467-019-09989-y
Publication date: May 17, 2019
PMID: 31101807
The dynamic conformational landscape of the protein methyltransferase SETD8.
Chen S, Wiewiora RP, Meng F, Babault N, Ma A, Yu W, Qian K, Hu H, Zou H, Wang J, Fan S, Blum G, Pittella-Silva F, Beauchamp KA, Tempel W, Jiang H, Chen K, Skene RJ, Zheng YG, Brown PJ, Jin J, Luo C, Chodera JD, Luo M
Elife 8: . doi: 10.7554/eLife.45403
Publication date: May 13, 2019
PMID: 31081496
Construction of a Shape‐Diverse Fragment Set: Design, Synthesis and Screen against Aurora‐A Kinase
Zhang R, McIntyre PJ, Collins PM, Foley DJ, Arter C, von Delft F, Bayliss R, Warriner S, Nelson A
Chemistry – A European Journal 25:6831-6839 . doi: 10.1002/chem.201900815
Publication date: May 10, 2019
PMID: 31026091
Discovery of Pyrrolo[3,2- d]pyrimidin-4-one Derivatives as a New Class of Potent and Cell-Active Inhibitors of P300/CBP-Associated Factor Bromodomain.
Huang L, Li H, Li L, Niu L, Seupel R, Wu C, Cheng W, Chen C, Ding B, Brennan PE, Yang S
Journal of medicinal chemistry 62:4526-4542 . doi: 10.1021/acs.jmedchem.9b00096
Publication date: May 9, 2019
PMID: 30998845
ALK2 inhibitors display beneficial effects in preclinical models of ACVR1 mutant diffuse intrinsic pontine glioma
Carvalho D, Taylor KR, Olaciregui NG, Molinari V, Clarke M, Mackay A, Ruddle R, Henley A, Valenti M, Hayes A, Brandon ADH, Eccles SA, Raynaud F, Boudhar A, Monje M, Popov S, Moore AS, Mora J, Cruz O, Vinci M, Brennan PE, Bullock AN, Carcaboso AM, Jones C
Communications Biology 2:156- . doi: 10.1038/s42003-019-0420-8
Publication date: May 9, 2019
PMID: 31098401
Rapid covalent-probe discovery by electrophile-fragment screening.
Resnick E, Bradley A, Gan J, Douangamath A, Krojer T, Sethi R, Geurink PP, Aimon A, Amitai G, Bellini D, Bennett J, Fairhead M, Fedorov O, Gabizon R, Gan J, Guo J, Plotnikov A, Reznik N, Ruda GF, Díaz-Sáez L, Straub VM, Szommer T, Velupillai S, Zaidman D, Zhang Y, Coker AR, Dowson CG, Barr H, Wang C, Huber KVM, Brennan PE, Ovaa H, von Delft F, London N
J. Am. Chem. Soc. . doi: 10.1021/jacs.9b02822
Publication date: May 7, 2019
PMID: 31060360
Structure and function of eTudor domain containing TDRD proteins.
Gan B, Chen S, Liu H, Min J, Liu K
Crit. Rev. Biochem. Mol. Biol. 1-14 . doi: 10.1080/10409238.2019.1603199
Publication date: May 3, 2019
PMID: 31046474
Identification of a novel biomarker for pyridoxine-dependent epilepsy: Implications for newborn screening
Wempe MF, Kumar A, Kumar V, Choi YJ, Swanson MA, Friederich MW, Hyland K, Yue WW, Van Hove JLK, Coughlin CR
Journal of Inherited Metabolic Disease 42:565-574 . doi: 10.1002/jimd.12059
Publication date: May 1, 2019
PMID: 30663059

April 2019

Structure-guided fragment-based drug discovery at the synchrotron: screening binding sites and correlations with hotspot mapping
Thomas SE, Collins P, James RH, Mendes V, Charoensutthivarakul S, Radoux C, Abell C, Coyne AG, Floto RA, von Delft F, Blundell TL
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 377:20180422-20180422 . doi: 10.1098/rsta.2018.0422
Publication date: April 29, 2019
PMID: 31030650
A Perspective on Extreme Open Science: Companies Sharing Compounds without Restriction.
Drewry DH, Wells CI, Zuercher WJ, Willson TM
SLAS Discov 2472555219838210 . doi: 10.1177/2472555219838210
Publication date: April 29, 2019
PMID: 31034310
Construction of a Shape-Diverse Fragment Set: Design, Synthesis and Screen against Aurora-A Kinase.
Zhang R, McIntyre PJ, Collins PM, Foley DJ, Arter C, von Delft F, Bayliss R, Warriner S, Nelson A
Chemistry . doi: 10.1002/chem.201900815
Publication date: April 26, 2019
PMID: 31026091
Crystal structure of human RIOK2 bound to a specific inhibitor.
Wang J, Varin T, Vieth M, Elkins JM
Open Biol 9(4):190037 . doi: 10.1098/rsob.190037
Publication date: April 26, 2019
PMID: 30991936
Crosstalk between RNA Pol II C-Terminal Domain Acetylation and Phosphorylation via RPRD Proteins.
Ali I, Ruiz DG, Ni Z, Johnson JR, Zhang H, Li PC, Khalid MM, Conrad RJ, Guo X, Min J, Greenblatt J, Jacobson M, Krogan NJ, Ott M
Mol. Cell . doi: 10.1016/j.molcel.2019.04.008
Publication date: April 26, 2019
PMID: 31054975
Crystal structure of human RIOK2 bound to a specific inhibitor
Wang J, Varin T, Vieth M, Elkins JM
Open Biology 9:190037- . doi: 10.1098/rsob.190037
Publication date: April 26, 2019
PMID: 30991936
Discovery of selective activators of PRC2 mutant EED-I363M.
Suh JL, Barnash KD, Abramyan TM, Li F, The J, Engelberg IA, Vedadi M, Brown PJ, Kireev DB, Arrowsmith CH, James LI, Frye SV
Sci Rep 9(1):6524 . doi: 10.1038/s41598-019-43005-z
Publication date: April 25, 2019
PMID: 31024026
A chemical toolbox for the study of bromodomains and epigenetic signaling.
Wu Q, Heidenreich D, Zhou S, Ackloo S, Krämer A, Nakka K, Lima-Fernandes E, Deblois G, Duan S, Vellanki RN, Li F, Vedadi M, Dilworth J, Lupien M, Brennan PE, Arrowsmith CH, Müller S, Fedorov O, Filippakopoulos P, Knapp S
Nat Commun 10(1):1915 . doi: 10.1038/s41467-019-09672-2
Publication date: April 23, 2019
PMID: 31015424
Design of a Cyclin G Associated Kinase (GAK)/Epidermal Growth Factor Receptor (EGFR) Inhibitor Set to Interrogate the Relationship of EGFR and GAK in Chordoma.
Asquith CRM, Naegeli KM, East MP, Laitinen T, Havener TM, Wells CI, Johnson GL, Drewry DH, Zuercher WJ, Morris DC
J. Med. Chem. . doi: 10.1021/acs.jmedchem.9b00350
Publication date: April 19, 2019
PMID: 30973735

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