Publications

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Displaying 201 - 250 of 1788

2019

January 2019

Alterations on growth and cell organization of Giardia intestinalis trophozoites after treatment with KH-TFMDI, a novel class III histone deacetylase inhibitor.

Gadelha, APR; Bravim, B; Vidal, J; Reignault, LC; Cosme, B; Huber, K; Bracher, F; de Souza, W;
International Journal of Medical Microbiology 309:130-142 . doi: 10.1016/j.ijmm.2019.01.002
Publication date: January 15, 2019
PMID: 30665874

4'-Phosphopantetheine and long acyl chain-dependent interactions are integral to human mitochondrial acyl carrier protein function.

Majmudar, JD; Feng, X; Fox, NG; Nabhan, JF; Towle, T; Ma, T; Gooch, R; Bulawa, C; Yue, WW; Martelli, A;
MedChemComm 10:209-220 . doi: 10.1039/c8md00489g
Publication date: January 8, 2019
PMID: 30881609

Structural insights into trans-histone regulation of H3K4 methylation by unique histone H4 binding of MLL3/4.

Liu Y, Qin S, Chen TY, Lei M, Dhar SS, Ho JC, Dong A, Loppnau P, Li Y, Lee MG, Min J
Nat Commun 10(1):36 . doi: 10.1038/s41467-018-07906-3
Publication date: January 3, 2019
PMID: 30604749

A chemical biology toolbox to study protein methyltransferases and epigenetic signaling.

Scheer S, Ackloo S, Medina TS, Schapira M, Li F, Ward JA, Lewis AM, Northrop JP, Richardson PL, Kaniskan HÜ, Shen Y, Liu J, Smil D, McLeod D, Zepeda-Velazquez CA, Luo M, Jin J, Barsyte-Lovejoy D, Huber KVM, De Carvalho DD, Vedadi M, Zaph C, Brown PJ, Arrowsmith CH
Nat Commun 10(1):19 . doi: 10.1038/s41467-018-07905-4
Publication date: January 3, 2019
PMID: 30604761

UbiHub: a data hub for the explorers of ubiquitination pathways.

Liu L, Damerell DR, Koukouflis L, Tong Y, Marsden BD, Schapira M
Bioinformatics . doi: 10.1093/bioinformatics/bty1067
Publication date: January 2, 2019
PMID: 30601939

An Activity-Based Probe Targeting Non-Catalytic, Highly Conserved Amino Acid Residues within Bromodomains.

D'Ascenzio, M; Pugh, KM; Konietzny, R; Berridge, G; Tallant, C; Hashem, S; Monteiro, O; Thomas, JR; Schirle, M; Knapp, S; Marsden, B; Fedorov, O; Bountra, C; Kessler, BM; Brennan, PE;
Angewandte Chemie International Edition 58:1007-1012 . doi: 10.1002/anie.201807825
Publication date: January 1, 2019
PMID: 30589164

Managing, mining and visualizing open-access structural and chemical biology data

MARSDEN B.
:- . doi:
Publication date: January 1, 2019
PMID:

2018

December 2018

Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains.

Lambert, J-P; Picaud, S; Fujisawa, T; Hou, H; Savitsky, P; Uusküla-Reimand, L; Gupta, GD; Abdouni, H; Lin, Z-Y; Tucholska, M; Knight, JDR; Gonzalez-Badillo, B; St-Denis, N; Newman, JA; Stucki, M; Pelletier, L; Bandeira, N; Wilson, MD; Filippakopoulos, P; Gingras, A-C;
Molecular Cell 73:621-638.e17 . doi: 10.1016/j.molcel.2018.11.006
Publication date: December 13, 2018
PMID: 30554943

Guiding COMPASS: Dpy-30 Positions SET1/MLL Epigenetic Signaling.

Dilworth D, Arrowsmith CH
Structure 26(12):1567-1570 . doi: 10.1016/j.str.2018.11.010
Publication date: December 4, 2018
PMID: 30517884

November 2018

Design, Synthesis and Characterization of Covalent KDM5 Inhibitors.

Vazquez-Rodriguez, S; Wright, M; Rogers, CM; Cribbs, AP; Velupillai, S; Philpott, M; Lee, H; Dunford, JE; Huber, KVM; Robers, MB; Vasta, JD; Thezenas, M-L; Bonham, S; Kessler, B; Bennett, J; Fedorov, O; Raynaud, F; Donovan, A; Blagg, J; Bavetsias, V; Oppermann, U; Bountra, C; Kawamura, A; Brennan, PE;
Angewandte Chemie International Edition 58:515-519 . doi: 10.1002/anie.201810179
Publication date: November 15, 2018
PMID: 30431220

Selective Inhibitors of a Human Prolyl Hydroxylase (OGFOD1) Involved in Ribosomal Decoding.

Thinnes, CC; Lohans, CT; Abboud, MI; Yeh, T-L; Tumber, A; Nowak, RP; Attwood, M; Cockman, ME; Oppermann, U; Loenarz, C; Schofield, CJ;
Chemistry - A European Journal 25:2019-2024 . doi: 10.1002/chem.201804790
Publication date: November 14, 2018
PMID: 30427558

Arginine does not rescue p.Q188R mutation deleterious effect in classic galactosemia.

Haskovic, M; Derks, B; van der Ploeg, L; Trommelen, J; Nyakayiru, J; van Loon, LJC; Mackinnon, S; Yue, WW; Peake, RWA; Zha, L; Demirbas, D; Qi, W; Huang, X; Berry, GT; Achten, J; Bierau, J; Rubio-Gozalbo, ME; Coelho, AI;
Orphanet Journal of Rare Diseases 13:212- . doi: 10.1186/s13023-018-0954-8
Publication date: November 26, 2018
PMID: 30477550

Structure-Based Approach toward Identification of Inhibitory Fragments for Eleven-Nineteen-Leukemia Protein (ENL).

Heidenreich, D; Moustakim, M; Schmidt, J; Merk, D; Brennan, PE; Fedorov, O; Chaikuad, A; Knapp, S;
Journal of Medicinal Chemistry 61:10929-10934 . doi: 10.1021/acs.jmedchem.8b01457
Publication date: November 26, 2018
PMID: 30407816

Allosteric Modulation of Binding Specificity by Alternative Packing of Protein Cores.

Ben-David M, Huang H, Sun MGF, Corbi-Verge C, Petsalaki E, Liu K, Gfeller D, Garg P, Tempel W, Sochirca I, Shifman JM, Davidson A, Min J, Kim PM, Sidhu SS
J. Mol. Biol. . doi: 10.1016/j.jmb.2018.11.018
Publication date: November 21, 2018
PMID: 30471255

Direct interaction between the PRDM3 and PRDM16 tumor suppressors and the NuRD chromatin remodeling complex.

Ivanochko, D; Halabelian, L; Henderson, E; Savitsky, P; Jain, H; Marcon, E; Duan, S; Hutchinson, A; Seitova, A; Barsyte-Lovejoy, D; Filippakopoulos, P; Greenblatt, J; Lima-Fernandes, E; Arrowsmith, CH;
Nucleic Acids Research :- . doi: 10.1093/nar/gky1192
Publication date: November 20, 2018
PMID: 30462309

Direct interaction between the PRDM3 and PRDM16 tumor suppressors and the NuRD chromatin remodeling complex.

Ivanochko D, Halabelian L, Henderson E, Savitsky P, Jain H, Marcon E, Duan S, Hutchinson A, Seitova A, Barsyte-Lovejoy D, Filippakopoulos P, Greenblatt J, Lima-Fernandes E, Arrowsmith CH
Nucleic Acids Res. . doi: 10.1093/nar/gky1192
Publication date: November 20, 2018
PMID: 30462309

An asparagine/glycine switch governs product specificity of human N-terminal methyltransferase NTMT2.

Dong C, Dong G, Li L, Zhu L, Tempel W, Liu Y, Huang R, Min J
Commun Biol 1:183 . doi: 10.1038/s42003-018-0196-2
Publication date: November 13, 2018
PMID: 30417120

Structures of DPAGT1 Explain Glycosylation Disease Mechanisms and Advance TB Antibiotic Design.

Dong, YY; Wang, H; Pike, ACW; Cochrane, SA; Hamedzadeh, S; Wyszyński, FJ; Bushell, SR; Royer, SF; Widdick, DA; Sajid, A; Boshoff, HI; Park, Y; Lucas, R; Liu, W-M; Lee, SS; Machida, T; Minall, L; Mehmood, S; Belaya, K; Liu, W-W; Chu, A; Shrestha, L; Mukhopadhyay, SMM; Strain-Damerell, C; Chalk, R; Burgess-Brown, NA; Bibb, MJ; Barry Iii, CE; Robinson, CV; Beeson, D; Davis, BG; Carpenter, EP;
Cell 175:1045-1058.e16 . doi: 10.1016/j.cell.2018.10.037
Publication date: November 1, 2018
PMID: 30388443

October 2018

Oxidation resistance 1 regulates post-translational modifications of peroxiredoxin 2 in the cerebellum.

Svistunova, DM; Simon, JN; Rembeza, E; Crabtree, M; Yue, WW; Oliver, PL; Finelli, MJ;
Free Radical Biology and Medicine 130:151-162 . doi: 10.1016/j.freeradbiomed.2018.10.447
Publication date: October 30, 2018
PMID: 30389497

Discovery of a Selective Inhibitor for the YEATS Domains of ENL/AF9.

Christott, T; Bennett, J; Coxon, C; Monteiro, O; Giroud, C; Beke, V; Felce, SL; Gamble, V; Gileadi, C; Poda, G; Al-Awar, R; Farnie, G; Fedorov, O;
Slas Discovery 24:133-141 . doi: 10.1177/2472555218809904
Publication date: October 24, 2018
PMID: 30359161

MYC Protein Interactome Profiling Reveals Functionally Distinct Regions that Cooperate to Drive Tumorigenesis.

Kalkat M, Resetca D, Lourenco C, Chan PK, Wei Y, Shiah YJ, Vitkin N, Tong Y, Sunnerhagen M, Done SJ, Boutros PC, Raught B, Penn LZ
Mol. Cell . doi: 10.1016/j.molcel.2018.09.031
Publication date: October 30, 2018
PMID: 30415952

Identification of a cellularly active SIRT6 allosteric activator.

Huang Z, Zhao J, Deng W, Chen Y, Shang J, Song K, Zhang L, Wang C, Lu S, Yang X, He B, Min J, Hu H, Tan M, Xu J, Zhang Q, Zhong J, Sun X, Mao Z, Lin H, Xiao M, Chin YE, Jiang H, Xu Y, Chen G, Zhang J
Nat. Chem. Biol. . doi: 10.1038/s41589-018-0150-0
Publication date: October 29, 2018
PMID: 30374165

Palladium-mediated enzyme activation suggests multiphase initiation of glycogenesis.

Bilyard, MK; Bailey, HJ; Raich, L; Gafitescu, MA; Machida, T; Iglésias-Fernández, J; Lee, SS; Spicer, CD; Rovira, C; Yue, WW; Davis, BG;
Nature 563:235-240 . doi: 10.1038/s41586-018-0644-7
Publication date: October 23, 2018
PMID: 30356213

Characterization of inv(3) cell line OCI-AML-20 with stroma dependent CD34 expression.

Luciani GM, Xie L, Dilworth D, Tierens A, Moskovitz Y, Murison A, Szewczyk MM, Mitchell A, Lupien M, Shlush L, Dick JE, Arrowsmith CH, Barsyte-Lovejoy D, Minden MD
Exp. Hematol. . doi: 10.1016/j.exphem.2018.10.006
Publication date: October 20, 2018
PMID: 30352278

Arginine methylation of FOXP3 is crucial for the suppressive function of regulatory T cells.

Kagoya Y, Saijo H, Matsunaga Y, Guo T, Saso K, Anczurowski M, Wang CH, Sugata K, Murata K, Butler MO, Arrowsmith CH, Hirano N
J. Autoimmun. . doi: 10.1016/j.jaut.2018.09.011
Publication date: October 11, 2018
PMID: 30318155

MYC Interacts with the G9a Histone Methyltransferase to Drive Transcriptional Repression and Tumorigenesis.

Tu WB, Shiah YJ, Lourenco C, Mullen PJ, Dingar D, Redel C, Tamachi A, Ba-Alawi W, Aman A, Al-Awar R, Cescon DW, Haibe-Kains B, Arrowsmith CH, Raught B, Boutros PC, Penn LZ
Cancer Cell 34(4):579-595.e8 . doi: 10.1016/j.ccell.2018.09.001
Publication date: October 8, 2018
PMID: 30300580

Discovery of an MLLT1/3 YEATS Domain Chemical Probe.

Moustakim, M; Christott, T; Monteiro, OP; Bennett, J; Giroud, C; Ward, J; Rogers, CM; Smith, P; Panagakou, I; Díaz-Sáez, L; Felce, SL; Gamble, V; Gileadi, C; Halidi, N; Heidenreich, D; Chaikuad, A; Knapp, S; Huber, KVM; Farnie, G; Heer, J; Manevski, N; Poda, G; Al-Awar, R; Dixon, DJ; Brennan, PE; Fedorov, O;
Angewandte Chemie International Edition 57:16302-16307 . doi: 10.1002/anie.201810617
Publication date: October 4, 2018
PMID: 30288907

Structural Analysis of Inhibitor Binding to CAMKK1 Identifies Features Necessary for Design of Specific Inhibitors

Santiago, ADS; Couñago, R; Zonzini Ramos, P; Godoi, PHC; Massirer, KB; Gileadi, O; Elkins, J;
Scientific Reports :- . doi: 10.1101/292797
Publication date: October 3, 2018
PMID: 30287839

July 2018

SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications.

Damerell, DR; Strain-Damerell, C; Garsot, S; Joyce, SP; Barrett, P; Marsden, BD;
Bioinformatics 35:349-351 . doi: 10.1093/bioinformatics/bty549
Publication date: July 3, 2018
PMID: 29982288

IDENTIFICATION OF SMALL MOLECULES TARGETING THE IL-17 INFLAMMATORY PATHWAY BY LABEL-FREE ASSAYS

Alvarez-Coiradas, E; Munteanu, CR; Gomez-Tourino, I; Diaz-Saez, L; Huber, K; Garcia, MIL; Dominguez, E;
Basic and Clinical Pharmacology and Toxicology 123:43-43 . doi:
Publication date: July 31, 2018
PMID:

The Combination of Human Urinary Kallidinogenase and Mild Hypothermia Protects Adult Rats Against Hypoxic-Ischemic Encephalopathy-Induced Injury by Promoting Angiogenesis and Regeneration.

Gao X, Xie H, Zhu S, Yu B, Xian Y, Ouyang Q, Ji Y, Yang X, Wen C, Wang P, Tong Y, Wang Q
Front Aging Neurosci 10:196 . doi: 10.3389/fnagi.2018.00196
Publication date: July 28, 2018
PMID: 30050428

SGC-GAK-1: a chemical probe for cyclin G associated kinase (GAK)

Asquith, C; Berger, B-T; Wan, J; Bennett, J; East, M; Elkins, J; Fedorov, O; Godoi, P; Hunter, D; Knapp, S; Mueller, S; Wells, C; Earp, S; Willson, T; Zuercher, W;
:- . doi: 10.1101/376772
Publication date: July 24, 2018
PMID:

Zinc(II) binding on human wild-type ISCU and Met140 variants modulates NFS1 desulfurase activity.

Fox, NG; Martelli, A; Nabhan, JF; Janz, J; Borkowska, O; Bulawa, C; Yue, WW;
Biochimie 152:211-218 . doi: 10.1016/j.biochi.2018.07.012
Publication date: July 18, 2018
PMID: 30031876

LLY-283, a Potent and Selective Inhibitor of Arginine Methyltransferase 5, PRMT5, with Antitumor Activity.

Bonday ZQ, Cortez GS, Grogan MJ, Antonysamy S, Weichert K, Bocchinfuso WP, Li F, Kennedy S, Li B, Mader MM, Arrowsmith CH, Brown PJ, Eram MS, Szewczyk MM, Barsyte-Lovejoy D, Vedadi M, Guccione E, Campbell RM
ACS Med Chem Lett 9(7):612-617 . doi: 10.1021/acsmedchemlett.8b00014
Publication date: July 12, 2018
PMID: 30034588

January 2018

WNT Activates the AAK1 Kinase to Promote Clathrin-Mediated Endocytosis of LRP6 and Establish a Negative Feedback Loop.

Agajanian, MJ; Walker, MP; Axtman, AD; Ruela-de-Sousa, RR; Serafin, DS; Rabinowitz, AD; Graham, DM; Ryan, MB; Tamir, T; Nakamichi, Y; Gammons, MV; Bennett, JM; Couñago, RM; Drewry, DH; Elkins, JM; Gileadi, C; Gileadi, O; Godoi, PH; Kapadia, N; Müller, S; Santiago, AS; Sorrell, FJ; Wells, CI; Fedorov, O; Willson, TM; Zuercher, WJ; Major, MB;
Cell Reports 26:79-93.e8 . doi: 10.1016/j.celrep.2018.12.023
Publication date: January 1, 2018
PMID: 30605688

September 2018

The structural basis for forkhead box family specificity revealed by the crystal structure of human FOXN1 in complex with DNA

Newman, J; Aitkenhead, H; Gavard, A; Rota, I; Handel, A; Hollander, G; Gileadi, O;
:- . doi: 10.1101/428011
Publication date: September 25, 2018
PMID:

Chemical Instability and Promiscuity of Arylmethylidenepyrazolinone-Based MDMX Inhibitors.

Stefaniak, J; Lewis, AM; Conole, D; Galan, SRG; Bataille, CJR; Wynne, GM; Castaldi, MP; Lundbäck, T; Russell, AJ; Huber, KVM;
ACS Chemical Biology 13:2849-2854 . doi: 10.1021/acschembio.8b00665
Publication date: September 18, 2018
PMID: 30216042

Design, Synthesis and Characterization of Covalent KDM5 Inhibitors

Vazquez-Rodriguez, S; Wright, M; Rogers, C; Cribbs, A; Velupillai, S; Philpott, M; Lee, H; Dunford, J; Huber, K; Robers, M; Vasta, J; Thezenas, M-L; Bonham, S; Kessler, B; Bennett, J; Fedorov, O; Raynaud, F; Donovan, A; Blagg, J; Bavetsias, V; Oppermann, U; Kawamura, A; Brennan, P;
:- . doi: 10.26434/chemrxiv.7072592
Publication date: September 10, 2018
PMID:

Guaiacol as a drug candidate for treating adult polyglucosan body disease.

Kakhlon, O; Ferreira, I; Solmesky, LJ; Khazanov, N; Lossos, A; Alvarez, R; Yetil, D; Pampou, S; Weil, M; Senderowitz, H; Escriba, P; Yue, WW; Akman, HO;
JCI insight 3:- . doi: 10.1172/jci.insight.99694
Publication date: September 5, 2018
PMID: 30185673

August 2018

Small molecule inhibitors reveal an indispensable scaffolding role of RIPK2 in NOD2 signaling.

Hrdinka, M; Schlicher, L; Dai, B; Pinkas, DM; Bufton, JC; Picaud, S; Ward, JA; Rogers, C; Suebsuwong, C; Nikhar, S; Cuny, GD; Huber, KV; Filippakopoulos, P; Bullock, AN; Degterev, A; Gyrd-Hansen, M;
EMBO Journal 37:- . doi: 10.15252/embj.201899372
Publication date: August 31, 2018
PMID: 30026309

Nut Directs p300-Dependent, Genome-Wide H4 Hyperacetylation in Male Germ Cells.

Shiota, H; Barral, S; Buchou, T; Tan, M; Couté, Y; Charbonnier, G; Reynoird, N; Boussouar, F; Gérard, M; Zhu, M; Bargier, L; Puthier, D; Chuffart, F; Bourova-Flin, E; Picaud, S; Filippakopoulos, P; Goudarzi, A; Ibrahim, Z; Panne, D; Rousseaux, S; Zhao, Y; Khochbin, S;
Cell Reports 24:3477-3487.e6 . doi: 10.1016/j.celrep.2018.08.069
Publication date: August 31, 2018
PMID: 30257209

Structural and Atropisomeric Factors Governing the Selectivity of Pyrimido-benzodiazipinones as Inhibitors of Kinases and Bromodomains.

Wang, J; Erazo, T; Ferguson, FM; Buckley, DL; Gomez, N; Muñoz-Guardiola, P; Diéguez-Martínez, N; Deng, X; Hao, M; Massefski, W; Fedorov, O; Offei-Addo, NK; Park, PM; Dai, L; DiBona, A; Becht, K; Kim, ND; McKeown, MR; Roberts, JM; Zhang, J; Sim, T; Alessi, DR; Bradner, JE; Lizcano, JM; Blacklow, SC; Qi, J; Xu, X; Gray, NS;
ACS Chemical Biology 13:2438-2448 . doi: 10.1021/acschembio.7b00638
Publication date: August 30, 2018
PMID: 30102854

BRAF/MAPK and GSK3 signaling converges to control MITF nuclear export.

Ngeow, KC; Friedrichsen, HJ; Li, L; Zeng, Z; Andrews, S; Volpon, L; Brunsdon, H; Berridge, G; Picaud, S; Fischer, R; Lisle, R; Knapp, S; Filippakopoulos, P; Knowles, H; Steingrímsson, E; Borden, KLB; Patton, EE; Goding, CR;
Proceedings of the National Academy of Sciences 115:E8668-E8677 . doi: 10.1073/pnas.1810498115
Publication date: August 26, 2018
PMID: 30150413

The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates.

Jakobsson ME, Małecki JM, Halabelian L, Nilges BS, Pinto R, Kudithipudi S, Munk S, Davydova E, Zuhairi FR, Arrowsmith CH, Jeltsch A, Leidel SA, Olsen JV, Falnes PØ
Nat Commun 9(1):3411 . doi: 10.1038/s41467-018-05646-y
Publication date: August 24, 2018
PMID: 30143613

Architecture of the native major royal jelly protein 1 oligomer.

Tian W, Li M, Guo H, Peng W, Xue X, Hu Y, Liu Y, Zhao Y, Fang X, Wang K, Li X, Tong Y, Conlon MA, Wu W, Ren F, Chen Z
Nat Commun 9(1):3373 . doi: 10.1038/s41467-018-05619-1
Publication date: August 22, 2018
PMID: 30135511

Development of 8-pyridopyrimidinone-based covalent inhibitors of KDM5B

Wright, M; Vazquez-Rodriguez, S; Brennan, P; Kawamura, A;
ACS National Meeting Book of Abstracts 256:- . doi:
Publication date: August 18, 2018
PMID:

Development of a YEATS-domain chemical probe

Moustakim, M; Monteiro, O; Bennett, J; Giroud, C; Christott, T; Saez, L; Panagakou, I; Felce, L; Gamble, V; Huber, K; Farnie, G; Heer, J; Dixon, D; Brennan, P; Federov, O;
ACS National Meeting Book of Abstracts 256:- . doi:
Publication date: August 18, 2018
PMID:

Development of KDM5 covalent inhibitors as chemical probes

Vazquez-Rodriguez, S; Wright, M; Brennan, P;
ACS National Meeting Book of Abstracts 256:- . doi:
Publication date: August 18, 2018
PMID:

Novel Quinazolinone Inhibitors of ALK2 Flip between Alternate Binding Modes: Structure-Activity Relationship, Structural Characterization, Kinase Profiling, and Cellular Proof of Concept.

Hudson, L; Mui, J; Vázquez, S; Carvalho, DM; Williams, E; Jones, C; Bullock, AN; Hoelder, S;
Journal of Medicinal Chemistry 61:7261-7272 . doi: 10.1021/acs.jmedchem.8b00782
Publication date: August 6, 2018
PMID: 30085668

Design, Synthesis, and Biological Evaluation of 3-(Imidazo[1,2- a]pyrazin-3-ylethynyl)-4-isopropyl- N-(3-((4-methylpiperazin-1-yl)methyl)-5-(trifluoromethyl)phenyl)benzamide as a Dual Inhibitor of Discoidin Domain Receptors 1 and 2.

Wang, Z; Zhang, Y; Pinkas, DM; Fox, AE; Luo, J; Huang, H; Cui, S; Xiang, Q; Xu, T; Xun, Q; Zhu, D; Tu, Z; Ren, X; Brekken, RA; Bullock, AN; Liang, G; Ding, K; Lu, X;
Journal of Medicinal Chemistry 61:7977-7990 . doi: 10.1021/acs.jmedchem.8b01045
Publication date: August 2, 2018
PMID: 30075624